ABS:Annotated regulatory binding sites from orthologous promoters:http://genome.imim.es/datasets/abs2005/abs.html ACTIVITY:Functional DNA/RNA site activity:http://wwwmgs.bionet.nsc.ru/mgs/systems/activity/ CisRed:Human regulatory DNA sequence motifs: http://www.cisred.org/ DBD:Transcription factor prediction database:http://stash.mrc-lmb.cam.ac.uk/skk/Cell2/index.cgi?Home DBTBS:Bacillus subtilis promoters and transcription factors: http://dbtbs.hgc.jp/ DoOP:Database of orthologous promoters: chordates and plants:http://doop.abc.hu/ DPInteract: Binding sites for E. coli DNA-binding proteins:http://arep.med.harvard.edu/dpinteract EPD: Eukaryotic promoter database:http://www.epd.isb-sib.ch Extra-TRAIN:Extragenic regions and transcriptional regulators in bacteria and archaea:http://www.era7.com/ExtraTrain/ HemoPDB:Hematopoietic promoter database: http://bioinformatics.med.ohio-state.edu/HemoPDB HTPSELEX:Transcription factor binding site sequences obtained using high-throughput SELEX method:http://www.isrec.isb-sib.ch/htpselex/ InsulatorDB:Insulator regulatory elements in vertebrate genomes:http://insulatordb.utmem.edu JASPAR:PSSMs for transcription factor DNA-binding sites: http://jaspar.cgb.ki.se MAPPER: Putative transcription factor binding sites in various genomes:http://bio.chip.org/mapper MPromDB:Mammalian promoter database:http://bioinformatics.med.ohio-state.edu/MPromDb PLACE:Plant cis-acting regulatory DNA elements:http://www.dna.affrc.go.jp/htdocs/PLACE PlantCARE:Plant promoters and cis-acting regulatory elements:http://intra.psb.ugent.be:8080/PlantCARE/ PlantProm:Plant promoter sequences for RNA polymerase II:http://mendel.cs.rhul.ac.uk/ PRODORIC:Prokaryotic database of gene regulation networks:http://prodoric.tu-bs.de/ PromEC:E. coli promoters with experimentally-identified transcriptional start sites:http://margalit.huji.ac.il/promec/ SELEX_DB: DNA and RNA binding sites for various proteins, found by systematic evolution of ligands by exponential enrichment:http://wwwmgs.bionet.nsc.ru/mgs/systems/selex/ TESS:Transcription element search system:http://www.cbil.upenn.edu/tess TiProD:Tissue-specific promoter database:http://tiprod.cbi.pku.edu.cn:8080/index.html TRACTOR db:Transcription factors in gamma-proteobacteria database: http://www.tractor.lncc.br/ TRANSCompel?:Composite regulatory elements affecting gene transcription in eukaryotes:http://www.gene-regulation.com/pub/databases.html#transcompel TRANSFAC?:Transcription factors and binding sites:http://transfac.gbf.de/TRANSFAC/index.html TRED:Transcriptional regulatory element database:http://rulai.cshl.edu/tred TRRD:Transcription regulatory regions of eukaryotic genes:http://www.bionet.nsc.ru/trrd/

from: http://bioinformatics.dxy.cn/bbs/thread/6082255?keywords=转录因子#6082255

Human TF repertoire: http://www.valleyofpigs.org/humantfs luscombe laboratory: http://www.ebi.ac.uk/luscombe Teichmann laboratory: http://www2.mrc-lmb.cam.ac.uk/ss/Teichmann_s DBD: http://www.transcriptionfactor.org EdgeDB: http://edgedb.umassmed.edu Ensembl Compara database: http://nov2008.archive.ensembl.org/info/docs/compara/index.html Ensembl Genome Browser: http://www.ensembl.org FlyTF: http://www.flytf.org FTFD: http://ftfd.snu.ac.kr Gene Ontology Home: http://www.geneontology.org interPro: http://www.ebi.ac.uk/interpro iPi: http://www.ebi.ac.uk/ipi JAsPAR: http://jaspar.genereg.net OMiM: http://www.ncbi.nlm.nih.gov/omim Pfam: http://pfam.sanger.ac.uk PlnTFDB: http://plntfdb.bio.uni-potsdam.de PubMed: http://www.pubmed.org RegulonDB: http://regulondb.ccg.unam.mx sGD: http://www.yeastgenome.org sUPERFAMily: http://supfam.cs.bris.ac.uk/sUPERFAMily symAtlas: http://symatlas.gnf.org/symAtlas TRAnsFAC: http://www.gene-regulation.com