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gplots: Various R Programming Tools for Plotting Data
Various R programming tools for plotting data, including:
- calculating and plotting locally smoothed summary function as
('bandplot', 'wapply'),
- enhanced versions of standard plots ('barplot2', 'boxplot2',
'heatmap.2', 'smartlegend'),
- manipulating colors ('col2hex', 'colorpanel', 'redgreen',
'greenred', 'bluered', 'redblue', 'rich.colors'),
- calculating and plotting two-dimensional data summaries ('ci2d',
'hist2d'),
- enhanced regression diagnostic plots ('lmplot2', 'residplot'),
- formula-enabled interface to 'stats::lowess' function ('lowess'),
- displaying textual data in plots ('textplot', 'sinkplot'),
- plotting a matrix where each cell contains a dot whose size
reflects the relative magnitude of the elements ('balloonplot'),
- plotting "Venn" diagrams ('venn'),
- displaying Open-Office style plots ('ooplot'),
- plotting multiple data on same region, with separate axes
('overplot'),
- plotting means and confidence intervals ('plotCI', 'plotmeans'),
- spacing points in an x-y plot so they don't overlap ('space').
Version:
3.1.3
Depends:
R (≥ 3.0)
Imports:
gtools, stats, caTools, KernSmooth, methods
Suggests:
grid, MASS, knitr, r2d2
Published:
2022-04-25
Author:
Gregory R. Warnes [aut],
Ben Bolker [aut],
Lodewijk Bonebakker [aut],
Robert Gentleman [aut],
Wolfgang Huber [aut],
Andy Liaw [aut],
Thomas Lumley [aut],
Martin Maechler [aut],
Arni Magnusson [aut],
Steffen Moeller [aut],
Marc Schwartz [aut],
Bill Venables [aut],
Tal Galili [ctb, cre]
Maintainer:
Tal Galili
BugReports:
https://github.com/talgalili/gplots/issues
License:
GPL-2
URL:
https://github.com/talgalili/gplots
NeedsCompilation:
no
Materials:
README NEWS ChangeLog
CRAN checks:
gplots results
Documentation:
Reference manual:
gplots.pdf
Vignettes:
Venn Diagrams with gplots
Downloads:
Package source:
gplots_3.1.3.tar.gz
Windows binaries:
r-devel: gplots_3.1.1.zip, r-release: gplots_3.1.1.zip, r-oldrel: gplots_3.1.1.zip
macOS binaries:
r-release (arm64): gplots_3.1.1.tgz, r-oldrel (arm64): gplots_3.1.1.tgz, r-release (x86_64): gplots_3.1.1.tgz, r-oldrel (x86_64): gplots_3.1.1.tgz
Old sources:
gplots archive
Reverse dependencies:
Reverse depends:
bayess, cellVolumeDist, COHCAP, corkscrew, DandEFA, DensParcorr, difconet, EBSeq, GSCA, HD2013SGI, highSCREEN, Hiiragi2013, iCheck, iCluster, made4, massiR, MBttest, MDplot, MetabolAnalyze, MethTargetedNGS, mgsa, mlma, mma, MOQA, muma, NBBttest, NestLink, PRISMA, RCA, ReorderCluster, RnBeads, SCINA, swamp, switchBox, tRanslatome
Reverse imports:
a4Base, ABAEnrichment, affycoretools, ArchaeoPhases, artMS, ASSIGN, asymmetry, BAMMtools, BatchQC, bingat, Biopeak, BNPMIXcluster, boundingbox, BUScorrect, BUSseq, cancerTiming, cbaf, CellScore, cellTree, ChIPseeker, chromswitch, CINdex, CluMSID, CNVPanelizer, CoFRA, CoGAPS, cogena, colordistance, compcodeR, CoNI, consensus, contiBAIT, corregp, corto, covid19.analytics, crmReg, crqa, DAPAR, debrowser, deco, DepecheR, DeSousa2013, DiffBind, DiffNet, DmelSGI, DNMF, DPBBM, eegc, EGAD, EGSEA, ENmix, erccdashboard, FAMetA, fDMA, flagme, Fletcher2013a, FLLat, flowCyBar, flowDensity, GDCRNATools, GeneOverlap, GOexpress, graphsim, HIREewas, HMP, HTqPCR, ideal, ImmuneSpaceR, indirect, infercnv, ionr, isomiRs, kissDE, KSEAapp, les, liayson, LineagePulse, M3Drop, MAIT, matie, metagene, metagenomeSeq, MetaIntegrator, MetaNeighbor, metaseqR2, MetProc, miRLAB, mitch, MLP, MLZ, mmabig, mogsa, momr, MoonlightR, msmsEDA, MSstats, MultBiplotR, MultiGroupO, multiUS, NCA, nearBynding, netboxr, oneSENSE, optCluster, PAA, Patterns, phenoTest, piano, plotMCMC, polimetrics, poliscidata, prider, proActiv, pwOmics, qat, quantable, r.jive, r4ss, RAM, RAMClustR, RCDT, rcellminer, RcmdrPlugin.BiclustGUI, rdi, ReactomeGSA, Repitools, rexposome, rgsepd, RITAN, RNAdecay, RNAinteract, RobMixReg, ROCR, RPPanalyzer, SAMtool, scone, SCOPE, serieslcb, sesem, shapeR, shinyepico, SingleCellSignalR, spatialHeatmap, SpiceFP, SpidermiR, sRACIPE, STATegRa, STRINGdb, TFARM, tigre, TimiRGeN, TIMP, tmod, TopKLists, TransView, TraRe, Trendy, TSCAN, uSORT, vannstats, variancePartition, vulcan, washeR, wilson, yarn
Reverse suggests:
AgiMicroRna, airpart, BioQC, CancerInSilico, ChemmineR, ChIPpeakAnno, clusternomics, cola, ComplexHeatmap, condvis, CoRegNet, CSFA, CTD, dartR, DeepBlueR, dendextend, dendsort, DGCA, enveomics.R, FRESA.CAD, gmodels, gtools, heatmaply, heplots, HistData, httk, InteractiveComplexHeatmap, interactiveDisplay, IPV, isobar, limma, Linnorm, MAnorm2, matR, MCbiclust, metamicrobiomeR, MKmisc, MoBPS, MSnbase, multiClust, OmicsPLS, psichomics, PtH2O2lipids, QFeatures, rattle, RcisTarget, RforProteomics, rich, RMassBank, sensitivity, sim1000G, Single.mTEC.Transcriptomes, STAN, TargetScore, TargetScoreData, timeOmics, TOAST
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=gplots
to link to this page.
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