Yan J, Wang X. Machine learning bridges omics sciences and plant breeding. Trends in Plant Science, 2022.

Yan J, Wang X. Unsupervised and semi-supervised learning: the next frontier in machine learning for plant systems biology. Plant Journal, 2022, 111: 1527-1538.

Liu S, Xu F, Xu Y, Wang Q, Yan J, Wang J, Wang X, Wang X. MODAS: exploring maize germplasm with multi-omics data association studies. Science Bulletin, 2022, 67(9): 903-906.

Yan J, Xu Y, Cheng Q, Jiang S, Xiao Y, Ma C, Yan J B, Wang X. LightGBM: Accelerated genomically designed crop breeding through ensemble learning. Genome Biology, 2021, 22(1): 1-24.

Xiao Y, Jiang S, Cheng Q, Wang X, Yan J, Zhang R, Qiao F, Ma C, Luo J, Li W, Liu H, Yang W, Song W, Meng Y, Warburton M L, Zhao J, Wang X, Yan J B. The genetic mechanism of heterosis utilization in maize improvement. Genome Biology, 2021, 22(1): 1-29.

Yang C, Yan J, Jiang S, Li X, Min H, Wang X, Hao D. Resequencing 250 soybean accessions: new insights into genes associated with agronomic traits and genetic networks. Genomics, Proteomics & Bioinformatics, 2021.

Yan J, Zhai H, Zhu L, Sa S, Ding X. obaDIA: one-step biological analysis pipeline for data-independent acquisition and other quantitative proteomics data. Bioinformatics, 2021, 37(14): 2066-2067.

Yan J, Zou D, Li C, Zhang Z, Song S, Wang X. SR4R: An integrative SNP resource for genomic breeding and population research in rice. Genomics, Proteomics & Bioinformatics. 2020, 18(2): 173–185.

Jiang S, Cheng Q, Yan J, Fu R, Wang X. Genome optimization for improvement of maize breeding. Theoretical and Applied Genetics, 2020, 133:1491–1502.

Liang P, Liu S, Xu F, Jiang S, Yan J, He Q, Liu W, Lin C, Zheng F, Wang X, Miao W. Powdery mildews are characterized by contracted carbohydrate metabolism and diverse effectors to adapt to obligate biotrophic lifestyle. Frontiers in Microbiology, 2018, 9:3160.

He L, Fu S, Xu Z, Yan J, Xu J, Zhou H, Zhou J, Chen X, Li Y, Au K F, Yao H. Hybrid sequencing of full-length cDNA transcripts of stems and leaves in Dendrobium officinale. Genes, 2017, 8(10):257.

Yan J, Lv S, Hu M, Gao Z, He H, Ma Q, Deng X W, Zhu Z, Wang X. Single-molecule sequencing assists genome assembly improvement and structural variation inference. Molecular Plant, 2016, 9(7): 1085–1087.

Li A, Liu D, Wu J, Zhao X, Hao M, Geng S, Yan J, Jiang X, Zhang L, Wu J, Yin L, Zhang R, Wu L, Zheng Y, Mao L. mRNA and small RNA transcriptomes reveal insights into dynamic homoeolog regulation of allopolyploid heterosis in nascent hexaploid wheat. Plant Cell, 2014, 26(5): 1878–1900.

Yan J, Cai Z. Molecular evolution and functional divergence of the cytochrome P450 3(CYP3) family in Actinopterygii (ray-finned fish). PLoS ONE, 2010, 5(12): 1–10.