Dear RoseTTAFold team,

when running the protein example after fixing issues #32 and #37 , I run into an error with psipred:

Running PSIPRED *** buffer overflow detected ***: psipred terminated ======= Backtrace: ========= /lib64/libc.so.6(__fortify_fail+0x37)[0x7f282a2d4577] /lib64/libc.so.6(+0x1166f2)[0x7f282a2d26f2] /lib64/libc.so.6(__fgets_chk+0x129)[0x7f282a2d2a19] psipred[0x401390] psipred[0x40158a] /lib64/libc.so.6(__libc_start_main+0xf5)[0x7f282a1de555] psipred[0x400a89] ======= Memory map: ======== 00400000-00402000 r-xp 00000000 fd:02 23127977 /home/X/opt_test/conda_envs/RFAA/bin/psipred 00601000-00602000 r--p 00001000 fd:02 23127977 /home/X/opt_test/conda_envs/RFAA/bin/psipred 00602000-00603000 rw-p 00002000 fd:02 23127977 /home/X/opt_test/conda_envs/RFAA/bin/psipred 00603000-006d3000 rw-p 00000000 00:00 0 02265000-02286000 rw-p 00000000 00:00 0 [heap] 7f282a1bc000-7f282a37f000 r-xp 00000000 fd:00 33588779 /usr/lib64/libc-2.17.so 7f282a37f000-7f282a57f000 ---p 001c3000 fd:00 33588779 /usr/lib64/libc-2.17.so 7f282a57f000-7f282a583000 r--p 001c3000 fd:00 33588779 /usr/lib64/libc-2.17.so 7f282a583000-7f282a585000 rw-p 001c7000 fd:00 33588779 /usr/lib64/libc-2.17.so 7f282a585000-7f282a58a000 rw-p 00000000 00:00 0 7f282a58a000-7f282a68b000 r-xp 00000000 fd:00 33588787 /usr/lib64/libm-2.17.so 7f282a68b000-7f282a88a000 ---p 00101000 fd:00 33588787 /usr/lib64/libm-2.17.so 7f282a88a000-7f282a88b000 r--p 00100000 fd:00 33588787 /usr/lib64/libm-2.17.so 7f282a88b000-7f282a88c000 rw-p 00101000 fd:00 33588787 /usr/lib64/libm-2.17.so 7f282a88c000-7f282a8ae000 r-xp 00000000 fd:00 33588491 /usr/lib64/ld-2.17.so 7f282aa8a000-7f282aa8d000 rw-p 00000000 00:00 0 7f282aa8f000-7f282aa93000 r--p 00000000 fd:02 541974413 /home/X/opt_test/conda_envs/RFAA/lib/libgcc_s.so.1 7f282aa93000-7f282aaa5000 r-xp 00004000 fd:02 541974413 /home/X/opt_test/conda_envs/RFAA/lib/libgcc_s.so.1 7f282aaa5000-7f282aaa8000 r--p 00016000 fd:02 541974413 /home/X/opt_test/conda_envs/RFAA/lib/libgcc_s.so.1 7f282aaa8000-7f282aaa9000 r--p 00019000 fd:02 541974413 /home/adminc/opt_test/conda_envs/RFAA/lib/libgcc_s.so.1 7f282aaa9000-7f282aaaa000 rw-p 0001a000 fd:02 541974413 /home/X/opt_test/conda_envs/RFAA/lib/libgcc_s.so.1 7f282aaaa000-7f282aaad000 rw-p 00000000 00:00 0 7f282aaad000-7f282aaae000 r--p 00021000 fd:00 33588491 /usr/lib64/ld-2.17.so 7f282aaae000-7f282aaaf000 rw-p 00022000 fd:00 33588491 /usr/lib64/ld-2.17.so 7f282aaaf000-7f282aab0000 rw-p 00000000 00:00 0 7fff68f21000-7fff68f42000 rw-p 00000000 00:00 0 [stack] 7fff68ffe000-7fff69000000 r-xp 00000000 00:00 0 [vdso] ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]

The system is CentOS7. Does psipred come pre-compiled? If its compiled during installation of RoseTTAFOld-all-atom, the local gcc verison is 4.8.5.

Please let me know if you need more information.