R 语言批量转移文件并压缩

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R 语言批量转移文件并压缩

2023-11-25 23:53| 来源: 网络整理| 查看: 265

使用ICGC数据库进行肿瘤组织突变分析,绘制瀑布图等

weixin_56804090: 您好,在运行a waterfall(inputMatrix,fileType = "Custom",variant_class_order = levels(factor(inputMatrix$variant_class)),mainPalette = rainbow(22),plotGenes = genes_family) Checking if input is properly formatted... Detected "Custom" file_type flag, looking for correct column names... Calculating frequency of mutations... Removing genes not in: PRMT1, PRMT2, PRMT3, CARM1, PRMT5, PRMT6, PRMT7, PRMT8, PRMT9 setting mutation hierarchy... NULL Warning messages: 1: In waterfall_Custom2anno(x, label_col) : Did not detect silent mutations in input, is this expected? 2: In data.table::melt(mutation_counts) : The melt generic in data.table has been passed a table and will attempt to redirect to the relevant reshape2 method; please note that reshape2 is deprecated, and this redirection is now deprecated as well. To continue using melt methods from reshape2 while both libraries are attached等,不知道怎么解决。

TCGA的差异分析(limma和edgeR)

酒732: 我的logFC全部都是正的,咋办呢,是不是哪出错了



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