看起来全部的报错但是R包居然是安装并且成功加载

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看起来全部的报错但是R包居然是安装并且成功加载

#看起来全部的报错但是R包居然是安装并且成功加载| 来源: 网络整理| 查看: 265

给一个学员设置R语言安装以及R包环境，遇到了一个超级有意思的现象，首先呢，在中国大陆网络设置太难了，不出意外GitHub在线安装失败：

> if (!requireNamespace("UCell", quietly = TRUE)) { + devtools::install_github("carmonalab/UCell") + } Downloading GitHub repo carmonalab/UCell@HEAD Error in utils::download.file(url, path, method = method, quiet = quiet, : cannot open URL 'https://api.github.com/repos/carmonalab/UCell/tarball/HEAD'

所以呢，我下载了这个包的GitHub包的压缩包文件网络传递给学生。

下载GitHub包的压缩包文件本地安装

前面的 install_github 命令，这个时候替换成 install_local 命令即可：

> install_local('carmonalab-UCell-v1.1-3-g968c780.tar.gz') carmonalab-UCell-968c780/docs/index.html: Can't create '\\\\?\\C:\\Users\\win10\\AppData\\Local\\Temp\\RtmpYNih6v\\remotes1e44c219324fa\\carmonalab-UCell-968c780\\docs\\index.html' tar.exe: Error exit delayed from previous errors. These packages have more recent versions available. It is recommended to update all of them. Which would you like to update?

不小心选择了更新一切~！

发现这个包的依赖不少啊：

Installing 42 packages: sitmo, RcppAnnoy, crayon, cli, glue, rlang, pillar, lifecycle, deldir, goftest, spatstat.geom, digest, cachem, bslib, later, R6, mime, httpuv, stringi, tibble, parallelly, RcppArmadillo, matrixStats, future, future.apply, cpp11, openssl, generics, data.table, crosstalk, tidyr, htmlwidgets, shiny, igraph, reticulate, spatstat.core, SeuratObject, plotly, pbapply, lmtest, fitdistrplus, Seurat Warning: 正在使用‘data.table’, ‘SeuratObject’, ‘Seurat’这个程序包，因此不会被安装将程序包安装入‘C:/Users/win10/Documents/R/win-library/4.1’ (因为‘lib’没有被指定)

尤其是：

有二进制版本的，但源代码版本是后来的: binary source needs_compilation glue 1.4.2 1.5.0 TRUE tibble 3.1.5 3.1.6 TRUE RcppArmadillo 0.10.7.0.0 0.10.7.3.0 TRUE cpp11 0.4.0 0.4.1 FALSE crosstalk 1.1.1 1.2.0 FALSE igraph 1.2.7 1.2.8 TRUE spatstat.core 2.3-0 2.3-1 TRUE lmtest 0.9-38 0.9-39 TRUE

然后就是满屏的报错：

* installing *source* package 'glue' ... ** package 'glue' successfully unpacked and MD5 sums checked ERROR: cannot remove earlier installation, is it in use? * removing 'C:/Users/win10/Documents/R/win-library/4.1/glue' * restoring previous 'C:/Users/win10/Documents/R/win-library/4.1/glue' Warning in file.copy(lp, dirname(pkgdir), recursive = TRUE, copy.date = TRUE) : 拷贝C:\Users\win10\Documents\R\win-library\4.1\00LOCK-glue\glue\libs\x64\glue.dll到C:\Users\win10\Documents\R\win-library\4.1\glue\libs\x64\glue.dll时出了问题：Permission denied * installing *source* package 'tibble' ... ** package 'tibble' successfully unpacked and MD5 sums checked ERROR: cannot remove earlier installation, is it in use? * removing 'C:/Users/win10/Documents/R/win-library/4.1/tibble' * restoring previous 'C:/Users/win10/Documents/R/win-library/4.1/tibble' Warning in file.copy(lp, dirname(pkgdir), recursive = TRUE, copy.date = TRUE) : 拷贝C:\Users\win10\Documents\R\win-library\4.1\00LOCK-tibble\tibble\libs\x64\tibble.dll到C:\Users\win10\Documents\R\win-library\4.1\tibble\libs\x64\tibble.dll时出了问题：Permission denied * installing *source* package 'RcppArmadillo' ... ** package 'RcppArmadillo' successfully unpacked and MD5 sums checked ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration **********************************************

但是居然不影响它的成功安装和加载：

** building package indices ** testing if installed package can be loaded from temporary location *** arch - i386 *** arch - x64 ** testing if installed package can be loaded from final location *** arch - i386 *** arch - x64 ** testing if installed package keeps a record of temporary installation path * DONE (UCell) There were 22 warnings (use warnings() to see them) > library(UCell) 载入需要的程辑包：Matrix >

让我百思不得其解！

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看起来全部的报错但是R包居然是安装并且成功加载

看起来全部的报错但是R包居然是安装并且成功加载

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