TCGA数据库中癌症最新缩写中英文对照表获取方法 Project号 与癌种之间对应关系 |
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如果想获得最新的信息，可以通过R包TCGAbiolinks中的getGDCprojects()方法得到： if (!requireNamespace("BiocManager", quietly=TRUE)){ install.packages("BiocManager")}BiocManager::install("TCGAbiolinks")library(TCGAbiolinks)getGDCprojects()截止2019.10.17，TCGA数据库中，最新的癌种中文与英文对照表如下： Study Abbreviation Study Name 翻译 TCGA-LAML Acute Myeloid Leukemia 急性髓性白血病 TCGA-ACC Adrenocortical carcinoma 肾上腺皮质癌 TCGA-BLCA Bladder Urothelial Carcinoma 膀胱尿路上皮癌 TCGA-LGG Brain Lower Grade Glioma 脑低级脑胶质瘤 TCGA-BRCA Breast invasive carcinoma 乳腺浸润癌 TCGA-CESC Cervical squamous cell carcinoma and endocervical adenocarcinoma 宫颈鳞状细胞癌和宫颈内膜腺癌 TCGA-CHOL Cholangiocarcinoma 胆管癌 TCGA-LCML Chronic Myelogenous Leukemia 慢性粒细胞性白血病 TCGA-COAD Colon adenocarcinoma 结肠腺癌 TCGA-ESCA Esophageal carcinoma 食道癌 TCGA-GBM Glioblastoma multiforme 胶质母细胞瘤 TCGA-HNSC Head and Neck squamous cell carcinoma 头颈部鳞状细胞癌 TCGA-KICH Kidney Chromophobe 肾染色体 TCGA-KIRC Kidney renal clear cell carcinoma 肾脏肾透明细胞癌 TCGA-KIRP Kidney renal papillary cell carcinoma 肾肾乳头状细胞癌 TCGA-LIHC Liver hepatocellular carcinoma 肝肝细胞癌 TCGA-LUAD Lung adenocarcinoma 肺腺癌 TCGA-LUSC Lung squamous cell carcinoma 肺鳞状细胞癌 TCGA-DLBC Lymphoid Neoplasm Diffuse Large B-cell Lymphoma 淋巴样肿瘤弥漫性大B细胞淋巴瘤 TCGA-MESO Mesothelioma 间皮瘤 TCGA-OV Ovarian serous cystadenocarcinoma 卵巢浆液性囊腺癌 TCGA-PAAD Pancreatic adenocarcinoma 胰腺腺癌 TCGA-PCPG Pheochromocytoma and Paraganglioma 嗜铬细胞瘤和副神经节瘤 TCGA-PRAD Prostate adenocarcinoma 前列腺腺癌 TCGA-READ Rectum adenocarcinoma 直肠腺癌 TCGA-SARC Sarcoma 肉瘤 TCGA-SKCM Skin Cutaneous Melanoma 皮肤皮肤黑色素瘤 TCGA-STAD Stomach adenocarcinoma 胃腺癌 TCGA-TGCT Testicular Germ Cell Tumors 睾丸生殖细胞肿瘤 TCGA-THYM Thymoma 胸腺瘤 TCGA-THCA Thyroid carcinoma 甲状腺癌 TCGA-UCS Uterine Carcinosarcoma 子宫癌肉瘤 TCGA-UCEC Uterine Corpus Endometrial Carcinoma 子宫体子宫内膜癌 TCGA-UVM Uveal Melanoma 葡萄膜黑色素瘤最新官方地址：https://gdc.cancer.gov/resources-tcga-users/tcga-code-tables/tcga-study-abbreviations 所有的PROJECT |id |name |:-------------------------|:----------------------------------------------------------------------------------------- |CPTAC-3 |CPTAC-Brain, Head and Neck, Kidney, Lung, Pancreas, Uterus |GENIE-GRCC |AACR Project GENIE - Contributed by Institut Gustave Roussy |GENIE-DFCI |AACR Project GENIE - Contributed by Dana-Farber Cancer Institute |GENIE-NKI |AACR Project GENIE - Contributed by Netherlands Cancer Institute |GENIE-VICC |AACR Project GENIE - Contributed by Vanderbilt-Ingram Cancer Center |GENIE-UHN |AACR Project GENIE - Contributed by Princess Margaret Cancer Centre |GENIE-MDA |AACR Project GENIE - Contributed by MD Anderson Cancer Center |GENIE-MSK |AACR Project GENIE - Contributed by Memorial Sloan Kettering Cancer Center |GENIE-JHU |AACR Project GENIE - Contributed by Johns Hopkins Sidney Kimmel Comprehensive Cancer Cente |FM-AD |Foundation Medicine Adult Cancer Clinical Dataset (FM-AD) |VAREPOP-APOLLO |VA Research Precision Oncology Program |CGCI-BLGSP |Burkitt Lymphoma Genome Sequencing Project |BEATAML1.0-CRENOLANIB |Clinical Resistance to Crenolanib in Acute Myeloid Leukemia Due to Diverse Molecular Mecha |TRIO-CRU |Ukrainian National Research Center for Radiation Medicine Trio Study |REBC-THYR |Comprehensive genomic characterization of radiation-related papillary thyroid cancer in th |TARGET-ALL-P2 |Acute Lymphoblastic Leukemia - Phase II |TARGET-ALL-P1 |Acute Lymphoblastic Leukemia - Phase I |TCGA-READ |Rectum Adenocarcinoma |TCGA-UCS |Uterine Carcinosarcoma |CMI-MPC |Count Me In (CMI): The Metastatic Prostate Cancer (MPC) Project |TCGA-COAD |Colon Adenocarcinoma |TCGA-CESC |Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma |TCGA-PAAD |Pancreatic Adenocarcinoma |TCGA-ESCA |Esophageal Carcinoma |TCGA-KIRP |Kidney Renal Papillary Cell Carcinoma |TCGA-PCPG |Pheochromocytoma and Paraganglioma |TCGA-HNSC |Head and Neck Squamous Cell Carcinoma |TCGA-BLCA |Bladder Urothelial Carcinoma |TCGA-STAD |Stomach Adenocarcinoma |TCGA-SARC |Sarcoma |TCGA-CHOL |Cholangiocarcinoma |TCGA-LAML |Acute Myeloid Leukemia |TCGA-THYM |Thymoma |TCGA-ACC |Adrenocortical Carcinoma |TCGA-SKCM |Skin Cutaneous Melanoma |TCGA-LUAD |Lung Adenocarcinoma |TCGA-LIHC |Liver Hepatocellular Carcinoma |TCGA-KIRC |Kidney Renal Clear Cell Carcinoma |TCGA-KICH |Kidney Chromophobe |TCGA-DLBC |Lymphoid Neoplasm Diffuse Large B-cell Lymphoma |TCGA-PRAD |Prostate Adenocarcinoma |TCGA-OV |Ovarian Serous Cystadenocarcinoma |TCGA-MESO |Mesothelioma |TCGA-LUSC |Lung Squamous Cell Carcinoma |TCGA-GBM |Glioblastoma Multiforme |TCGA-UVM |Uveal Melanoma |TCGA-LGG |Brain Lower Grade Glioma |HCMI-CMDC |NCI Cancer Model Development for the Human Cancer Model Initiative |TCGA-BRCA |Breast Invasive Carcinoma |TARGET-RT |Rhabdoid Tumor |TARGET-CCSK |Clear Cell Sarcoma of the Kidney |TCGA-TGCT |Testicular Germ Cell Tumors |TARGET-NBL |Neuroblastoma |CGCI-HTMCP-CC |HIV+ Tumor Molecular Characterization Project - Cervical Cancer |TARGET-ALL-P3 |Acute Lymphoblastic Leukemia - Phase III |TARGET-OS |Osteosarcoma |TARGET-AML |Acute Myeloid Leukemia |TARGET-WT |High-Risk Wilms Tumor |MP2PRT-WT |Molecular Profiling to Predict Response to Treatment - Wilms Tumor |EXCEPTIONAL_RESPONDERS-ER |Exceptional Responders |TCGA-UCEC |Uterine Corpus Endometrial Carcinoma |TCGA-THCA |Thyroid Carcinoma |CMI-ASC |Count Me In (CMI): The Angiosarcoma (ASC) Project |NCICCR-DLBCL |Genomic Variation in Diffuse Large B Cell Lymphomas |CPTAC-2 |CPTAC-Breast, Colon, Ovary |OHSU-CNL |Philadelphia-Negative Neutrophilic Leukemias (CNL/aCML/MDS/MPNu) |WCDT-MCRPC |Genomic Characterization of Metastatic Castration Resistant Prostate Cancer |ORGANOID-PANCREATIC |Pancreas Cancer Organoid Profiling |MMRF-COMMPASS |Multiple Myeloma CoMMpass Study |BEATAML1.0-COHORT |Functional Genomic Landscape of Acute Myeloid Leukemia |CMI-MBC |Count Me In (CMI): The Metastatic Breast Cancer (MBC) Project |CTSP-DLBCL1 |CTSP Diffuse Large B-Cell Lymphoma (DLBCL) CALGB 50303如果您对TCGA数据挖掘感兴趣，请学习我的TCGA系列课程： 《TCGA-生存分析》 《TCGA-基因差异表达分析》 《TCGA-转录因子调控》 《TCGA-ceRNA调控网络分析》 |
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